问题描述
我刚刚为nextflow创建了一个新环境，但是当我运行脚本时，流程步骤是这样展开的：
[warm up] executor > local
[9c/f50613] Submitted process > bowtie2_target_genome (2)
[1f/1b1f43] Submitted process > bowtie2_vector (1)
[d0/4b99a5] Submitted process > bowtie2_vector (3)
[ef/183556] Submitted process > bowtie2_target_genome (1)
[4a/330246] Submitted process > bowtie2_target_genome (4)
[0b/1e00ff] Submitted process > bowtie2_vector (4)
[bd/ad292b] Submitted process > bowtie2_vector (2)
[98/1caa92] Submitted process > bowtie2_vector (5)
[55/2f25bb] Submitted process > bowtie2_target_genome (5)
[05/5890e2] Submitted process > bowtie2_target_genome (3)
以前是这样的：
executor > local (1)
[14/0418b6] process > bowtie2_target_genome (3) [100%] 5 of 5
[a3/7b824b] process > bowtie2_vector (1) [100%] 5 of 5
[fc/1b8883] process > aln_sum (5) [100%] 5 of 5
[57/0762c0] process > create_bedgraph_and_bigwig (2) [100%] 5 of 5
解决方法
看起来您已将 -ansi-log false 添加到您的运行命令中。此选项的默认值为“true”，因此要么使用该选项，要么完全删除该选项。
在非交互式 shell 中运行 Nextflow 时，设置 -ansi-log false 很有帮助。您的命令行可能如下所示：
nextflow run -ansi-log false main.nf