错误：我的 bioconductor 不是 3.12 版吗？

编程问答 2022-05-22

问题描述

我已经重新安装了 R 4.0.3。我需要兼容的 Bioconductor 3.12。我相信我已经拥有了，当我这样做时：

BiocManager::install(version = "3.12")
--------------------------------------------------------------
Bioconductor version 3.12 (BiocManager 1.30.10),R 4.0.3 (2020-10-10)
Old packages: 'tidyr'
Update all/some/none? [a/s/n]: n

我不想要它们的更新版本，所以我想通过这个输出我已经有了我想要的东西。我继续安装我感兴趣的软件包：

BiocManager::install("maEndToEnd",version = "devel")
---------------------------------------------------------
Error: Bioconductor version '3.13' requires R version '4.1'; see
  https://bioconductor.org/install

这怎么可能？

PD：我不知道这是否与问题有关，但我发现我的库路径比预期的多，如果有帮助，我也会添加它们的内容：

.libPaths()
--------------------------------------------
[1] "/home/usr_name/R/x86_64-pc-linux-gnu-library/4.0"
affxparser       cpp11             ggraph                          jpeg            rvcheck
affy             DelayedArray      ggrepel                         lambda.r        S4Vectors
affyio           DO.db             GO.db                           latticeExtra    scatterpie
affyPLM          DOSE              GOSemSim                        limma           setRNG
annotate         downloader        gplots                          MatrixGenerics  shadowtext
AnnotationDbi    enrichplot        graph                           matrixStats     sNow
base64           fastmatch         graphite                        openxlsx        svglite
BeadDataPackR    ff                graphlayouts                    org.Hs.eg.db    systemfonts
Biobase          fgsea             gridExtra                       pheatmap        tidygraph
Biocgenerics     foreach           gridSVG                         plyr            tidyr
BiocManager      formatR           gtools                          polyclip        topGO
BiocParallel     Formula           Hmisc                           preprocesscore  tweenr
BiocVersion      futile.logger     htmlTable                       qvalue          viridis
Biostrings       futile.options    hugene10sttranscriptcluster.db  rappdirs        vsn
bit              gcrma             hwriter                         RcppEigen       XVector
caTools          genefilter        igraph                          reactome.db     zip
checkmate        geneplotter       illuminaio                      ReactomePA      zlibbioc
clusterProfiler  GenomeInfoDbData  IRanges                         reshape2
cowplot          ggforce           iterators                       rgraphviz
[2] "/usr/local/lib/R/site-library"
                  
[3] "/usr/lib/R/site-library" 
BH          covr         dplyr             gh           jquerylib   pkgbuild       rmarkdown    testthat
bit         cpp11        DT                git2r        jsonlite    pkgKitten      R.oo         tibble
bit64       Crayon       farver            gitcreds     knitr       processx       rprojroot    tinytex
brio        credentials  fastmap           glue         labeling    promises       Rsqlite      usethis
bslib       crosstalk    freetypeharfbuzz  hms          lifecycle   ps             rstudioapi   vctrs
cachem      data.table   future            htmltools    littler     quantreg       sass         vdiffr
callr       DBI          gdtools           htmlwidgets  magrittr    R6             shiny        waldo
cli         dbplyr       generics          httpuv       memoise     rappdirs       stringi      withr
cliapp      diffobj      gert              httr         parallelly  RcppArmadillo  sys          xfun
colorspace  digest       ggplot2           isoband      pillar      rlang          systemfonts  zip
                       
[4] "/usr/lib/R/library"
base     compiler  graphics   grid    methods   splines  stats4  tools         utils
cluster  datasets  Grdevices  Matrix  parallel  stats    tcltk   translations

解决方法

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